Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0777970.4d.2c with 3 members (chromosome 16 open reading frame 89)

Eumetazoa / Bilateria / Protostomia / Lophotrochozoa / Mollusca / Gastropoda / Euthyneura / Lymnaeoidea / Planorbidae /

Completeness score: 1.00

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This HOG has 36 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0777970.4d.3b	91	146	chromosome 16 open reading frame 89
2	HOG:E0777970.4d.2c	38	16	chromosome 16 open reading frame 89
3	HOG:E0777970.3c	6	5	chromosome 16 open reading frame 89
4	HOG:E0609094	5	11	UPF0764 protein C16orf89 homolog
5	HOG:E0777970.4d.3c	4	2	chromosome 16 open reading frame 89
6	HOG:E0777970.4d.3b.4a	4	87	chromosome 16 open reading frame 89
7	HOG:E0777970.4d.3a	4	2	chromosome 16 open reading frame 89
8	HOG:E0777970.4d.3b.8b	3	1	chromosome 16 open reading frame 89
9	HOG:E0777970.4d.3b.8a	3	1	chromosome 16 open reading frame 89
10	HOG:E0777970.4d.3b.4a.1a.1b	3	2	chromosome 16 open reading frame 89
11	HOG:E0777970.1b	3	1	chromosome 16 open reading frame 89
12	HOG:E0777970.1a	3	1	chromosome 16 open reading frame 89
13	HOG:E0506392	3	2	-
14	HOG:E0777970.4d.3b.7b	2	1	chromosome 16 open reading frame 89
15	HOG:E0777970.4d.3b.4a.1b	2	1	chromosome 16 open reading frame 89
16	HOG:E0777970.4d.3b.4a.1a.1a	2	61	chromosome 16 open reading frame 89
17	HOG:E0777970.4d.3b.3a	2	2	chromosome 16 open reading frame 89
18	HOG:E0777970.4d.2b	2	1	chromosome 16 open reading frame 89
19	HOG:E0777970.4b	2	6	chromosome 16 open reading frame 89
20	HOG:E0777970.2e	2	1	chromosome 16 open reading frame 89
21	HOG:E0579189	2	2	-
22	HOG:E0536726	2	18	Derived by automated computational analysis using gene prediction method Gnomon
23	HOG:E0777970.4d.3b.7a	1	1	chromosome 16 open reading frame 89
24	HOG:E0777970.4d.3b.4b	1	1	chromosome 16 open reading frame 89
25	HOG:E0777970.4d.3b.4a.2a	1	5	chromosome 16 open reading frame 89

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